Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs141748019 chr13:114153193 CAA/C 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs141764817 chr21:38466986 A/AT 9.32E-9 176 25.17 25.87 3.83 KM Plot
PCPG rs141769382 chr2:108529435 C/G 1.11E-16 170 25.43 25.67 3.17 KM Plot
PCPG rs141809032 chr2:98372619 A/ATGAT 8.01E-9 178 25.17 25.53 6.15 KM Plot
PCPG rs141871716 chr17:1450378 GCA/G 1.49E-5 175 24.53 25.87 25.17 KM Plot
PCPG rs142059189 chr17:1422356 TC/T 1.37E-5 176 24.7 25.87 13.02 KM Plot
PCPG rs142119790 chr8:126183951 T/TATA 3.12E-5 177 25.53 28.3 4.17 KM Plot
PCPG rs142269893 chr7:105162629 T/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs142312641 chr2:121539197 GC/G 0.000252 174 25.53 24.23 59.77 KM Plot
PCPG rs142324044 chr1:36433070 C/T 0.000208 175 25.53 24.7 10.3 KM Plot
PCPG rs142358444 chr2:24318674 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs142370407 chr1:36430202 C/G 0.000208 175 25.53 24.7 10.3 KM Plot
PCPG rs142382996 chr16:89904834 G/C 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs142388692 chr2:136545182 CTAAA/C 2.99E-5 175 25.87 23.77 9.72 KM Plot
PCPG rs142461099 chr5:50602739 G/T 7.17E-5 176 25.28 24.62 31.35 KM Plot